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Available sections:
| Target | log10(PSIBLAST E) | % identical | % coverage (of MP gene) | Latest Status |
|---|---|---|---|---|
| 1390B | -108.00 | 63.46 | 95.59 | Selected |
| 1392B | -18.70 | 60.26 | 45.09 | Selected |
| 1406B | -105.00 | 83.67 | 87.50 | Selected |
| 1411B | -139.00 | 72.35 | 78.34 | Selected |
| 1416B | -200.00 | 86.56 | 83.60 | Selected |
| 1419B | -142.00 | 97.50 | 99.38 | Selected |
ATGAAATCGAAGCTAAAGTTAAAACGTTATTTACTGTTTTTACCACTTTTACCGCTAGGGACGTTGTCACTAGCCAACAC CTACCTCCTCCAAGACCACAACACCCTCACCCCCTACACGCCCTTTACGACACCGCTCAATGGGGGGCTGGATGTCGTGC GCGCCGCCCATTTACACCCCTCATACGAACTCGTGGACTGAAAGCGGGTGGGGGATACCAAGTTGGTGGCGCTGGTCCGC TCAGCGTTGGTCAGGGTGAAATTCCAGGACACAACGAGTTCGGATCAAAGTAATACCAACCAAAATGCCTTGAGTTTTGA TACCCAAGAATCACAGAAGGCACTTAATGGCTCGCAGAGTGGATCTTCTGACACTTCCGGGTCTAACTCCCAAGACTTCG CCAGCTATGTCCTCATCTTTAAAGCCGCGCCCAGGGCCACGTGGGTGTTTGAACGCAAGATTAAGTTGGCGTTGCCCTAC GTTAAGCAGGAAAGTCAGGGTTCCGGCGATCAAGGTTCCAATGGTAAGGGCTCCCTCTACAAAACCCTCCAAGACCTCCT CGTCGAACAACCCGTGACCCCTTACACCCCGAATGCGGGGTTAGCCCGGGTGAATGGGGTTGCTCAGGATACGGTTCATT TTGGTTCGGGTCAAGAATCGAGTTGGAATTCCCAACGTTCCCAAAAAGGCCTTAAAAACAACCCCGGACCCAAAGCCGTC ACCGGCTTTAAGCTCGATAAGGGCCGCGCGTACCGGAAGCTGAATGAAAGTTGACCGGTGTATGAACCCCTGGATTCGAC CAAGGAGGGGAAGGGGAAGGATGAGAGCTCTTGGAAAAATTCGGAAAAAACAACAGCGGAAAATGATGCCCCGTTGGTGG GGATGGTTGGAAGTGGTGCGGCTGGAAGTGCTTCTAGTTTACAAGGCAATGGCTCGAACAGTTCGGGGTTAAAATCGCTC TTGAGATCAGCACCTGTCAGTGTTCCACCAAGCAGTACAAGTAATCAAACTTTAAGCTTATCTAACCCCGCTCCTGTGGG CCCACAAGCGGTTGTAAGCCAACCCGCGGGGGGTGCTACGGCAGCAGTGTCCGTCAATCGCACAGCGAGTGACACCGCCA CCTTTAGCAAGTACCTCAACACCGCCCAGGCCTTGCACCAGATGGGGGTGATTGTTCCGGGGTTGGAAAAATGAGGTGGT AACAACGGTACGGGTGTAGTGGCTAGCCGACAGGATGCTACTTCCACTAACCTGCCCCATGCGGCAGGTGCTTCCCAAAC GGGTTTGGGAACTGGTTCGCCCCGCGAACCAGCTTTAACCGCAACGTCACAGCGTGCCGTCACGGTGGTTGCTGGCCCCC TTCGTGCGGGCAATAGCAGTGAAACTGATGCCCTACCGAATGTCATCACCCAGCTCTATCATACTTCAACCGCCCAACTC GCTTACTTAAATGGCCAGATCGTTGTGATGGGTTCCGACCGGGTACCGAGTCTTTGGTATTGAGTTGTCGGGGAGGACCA GGAATCGGGCAAAGCGACCTGATGAGCGAAAACCGAGCTCAACTGGGGCACCGACAAGCAGAAGCAGTTTGTCGAAAACC AGTTGGGGTTTAAAGATGACTCAAATTCGGATTCCAAAAATTCGAATTTGAAGGCCCAAGGCCTCACCCAACCCGCCTAC CTCATCGCCGGTCTTGACGTTGTGGCCGACCACCTCGTCTTTGCGGCCTTTAAAGCGGGCGCGGTGGGGTATGATATGAC GACTGATTCGAGCGCTTCGACCTACAACCAAGCACTCGCCTGGTCGACCACGGCCGGGTTGGACAGTGATGGGGGGTACA AGGCCTTGGTGGAAAACACGGCCGGGCTCAACGGCCCGATTAATGGCTTGTTTACCCTGCTCGACACCTTTGCGTATGTG ACCCCCGTGAGTGGGATGAAAGGGGGGAGTCAGAATAATGAAGAAGTGCAAACGACTTACCCGGTCAAGTCCGACCAAAA GGCCACCGCCAAAATTGCCTCCTTAATTAATGCCAGCCCACTCAACAGTTATGGGGATGATGGGGTGACCGTGTTTGATG CCCTGGGCCTTAACTTTAACTTTAAGTTGAACGAGGAGCGCTTGCCATCGCGCACCGACCAACTGCTTGTGTATGGGATT GTAAACGAAAGTGAACTGAAGTCCGCACGGGAAAATGCCCAGTCGACCTCCGATGATAATTCAAACACCAAAGTCAAGTG AACCAACACCGCCTCGCACTACCTCCCCGTGCCGTATTACTACAGTGCCAATTTCCCCGAAGCGGGTAACAGAAGGCGAG CGGAGCAGCGGAATGGGGTGAAGATTAGCACCTTGGAATCGCAAGCCACTGATGGCTTTGCCAACTCGTTACTTAACTTT GGTACCGGTCTTAAAGCCGGTGTTGACCCAGCTCCAGTAGCACGGGGTCATAAACCGAACTATAGTGCAGTACTACTAGT GCGTGGTGGCGTTGTAAGGTTAAACTTTAACCCCGATACTGATAAACTGTTGGATTCTACTGACAAAAACAGTGAACCTA TCTCCTTCTCCTATACCCCATTTGGGTCTGCTGAAAGTGCCGTAGACCTCACCACGTTGAAGGATGTGACCTATATTGCT GAAAGTGGTCTGTGGTTCTATACCTTTGACAATGGTGAAAAACCAACGTACGATGGTAAACAACAACAGGTCAAAAACCG CAAGGGTTATGCTGTGATTACCGTATCACGTACCGGAATTGAATTTAACGAGGACGCTAATACCACAACCTTAAGCCAAG CCCCAGCTGCTTTGGCTGTCCAAAACGGGATTGCTTCCAGTCAGGACGACCTCACAGGCATCCTACCGTTATCCGATGAG TTCTCCGCTGTGATTACCAAGGATCAAACATGGACCGGTAAGGTTGATATCTATAAGAACACCAACGGGTTGTTTGAAAA GGATGATCAGCTATCGGAAAACGTGAAGAGGCGTGACAACGGTTTGGTCCCTATTTACAACGAAGGTATCGTCGATATTT GGGGCAGAGTGGATTTTGCTGCCAACAGTGTTTTGCAAGCGCGTAACCTCACTGATAAAACGGTTGATGAGGTGATCAAT AACCCCGATATCCTCCAAAGCTTCTTTAAGTTTACCCCAGCCTTTGATAACCAAAGAGCAATGCTAGTGGGGGAAAAGAC ATCGGATACTACCTTAACGGTTAAACCGAAGATTGAGTACTTGGATGGTAACTTCTATGGTGAGGATTCCAAGATTGCTG GAATTCCGCTCAACATTGATTTCCCTTCCCGGATTTTTGCTGGCTTTGCTGCTTTACCGTCCTGGGTCATTCCGGTATCA GTCGGTTCATCGGTGGGCATTCTCTTAATCCTGCTCATCTTAGGCCTTGGTATTGGAATTCCAATGTATAAGGTCCGCAA GCTTCAAGACTCCAGCTTTGTTGATGTGTTTAAAAAGGTGGATACGTTGACAACCGCTGTGGGTAGCGTGTACAAGAAGA TTATCACCCAAACGAGTGTGATCAAAAAAGCTCCTAGTGCGTTGAAAGCTGCTAATAACGCTGCTCCTAAAGCACCAGTT AAACCAGCTGCTCCAACAGCTCCAAGACCACCAGTCCAACCACCTAAAAAGGCTTAA
(1219 codons) fields: [triplet] [frequency: per thousand] ([number]) UUU26.3( 32) UCU6.6( 8) UAU14.8( 18) UGU0.0( 0) UUC7.4( 9) UCC20.5( 25) UAC16.4( 20) UGC0.0( 0) UUA17.2( 21) UCA9.8( 12) UAA0.8( 1) UGA5.7( 7) UUG23.0( 28) UCG20.5( 25) UAG0.0( 0) UGG8.2( 10) CUU9.8( 12) CCU7.4( 9) CAU4.1( 5) CGU6.6( 8) CUC25.4( 31) CCC16.4( 20) CAC4.1( 5) CGC8.2( 10) CUA7.4( 9) CCA17.2( 21) CAA28.7( 35) CGA1.6( 2) CUG10.7( 13) CCG13.9( 17) CAG18.0( 22) CGG6.6( 8) AUU19.7( 24) ACU11.5( 14) AAU26.3( 32) AGU25.4( 31) AUC11.5( 14) ACC41.0( 50) AAC37.7( 46) AGC12.3( 15) AUA0.0( 0) ACA9.8( 12) AAA29.5( 36) AGA4.1( 5) AUG6.6( 8) ACG17.2( 21) AAG35.3( 43) AGG4.1( 5) GUU15.6( 19) GCU30.4( 37) GAU36.9( 45) GGU27.9( 34) GUC18.9( 23) GCC32.8( 40) GAC21.3( 26) GGC21.3( 26) GUA8.2( 10) GCA9.8( 12) GAA26.3( 32) GGA6.6( 8) GUG33.6( 41) GCG18.9( 23) GAG9.8( 12) GGG26.3( 32)
Note: This was generated using the standard codon usage table; UGA codons in MP/MP genes will show up as terminators ("*")
atgaaatcgaagctaaagttaaaacgttatttactgtttttaccacttttaccgctaggg M K S K L K L K R Y L L F L P L L P L G acgttgtcactagccaacacctacctcctccaagaccacaacaccctcaccccctacacg T L S L A N T Y L L Q D H N T L T P Y T ccctttacgacaccgctcaatggggggctggatgtcgtgcgcgccgcccatttacacccc P F T T P L N G G L D V V R A A H L H P tcatacgaactcgtggactgaaagcgggtgggggataccaagttggtggcgctggtccgc S Y E L V D * K R V G D T K L V A L V R tcagcgttggtcagggtgaaattccaggacacaacgagttcggatcaaagtaataccaac S A L V R V K F Q D T T S S D Q S N T N caaaatgccttgagttttgatacccaagaatcacagaaggcacttaatggctcgcagagt Q N A L S F D T Q E S Q K A L N G S Q S ggatcttctgacacttccgggtctaactcccaagacttcgccagctatgtcctcatcttt G S S D T S G S N S Q D F A S Y V L I F aaagccgcgcccagggccacgtgggtgtttgaacgcaagattaagttggcgttgccctac K A A P R A T W V F E R K I K L A L P Y gttaagcaggaaagtcagggttccggcgatcaaggttccaatggtaagggctccctctac V K Q E S Q G S G D Q G S N G K G S L Y aaaaccctccaagacctcctcgtcgaacaacccgtgaccccttacaccccgaatgcgggg K T L Q D L L V E Q P V T P Y T P N A G ttagcccgggtgaatggggttgctcaggatacggttcattttggttcgggtcaagaatcg L A R V N G V A Q D T V H F G S G Q E S agttggaattcccaacgttcccaaaaaggccttaaaaacaaccccggacccaaagccgtc S W N S Q R S Q K G L K N N P G P K A V accggctttaagctcgataagggccgcgcgtaccggaagctgaatgaaagttgaccggtg T G F K L D K G R A Y R K L N E S * P V tatgaacccctggattcgaccaaggaggggaaggggaaggatgagagctcttggaaaaat Y E P L D S T K E G K G K D E S S W K N tcggaaaaaacaacagcggaaaatgatgccccgttggtggggatggttggaagtggtgcg S E K T T A E N D A P L V G M V G S G A gctggaagtgcttctagtttacaaggcaatggctcgaacagttcggggttaaaatcgctc A G S A S S L Q G N G S N S S G L K S L ttgagatcagcacctgtcagtgttccaccaagcagtacaagtaatcaaactttaagctta L R S A P V S V P P S S T S N Q T L S L tctaaccccgctcctgtgggcccacaagcggttgtaagccaacccgcggggggtgctacg S N P A P V G P Q A V V S Q P A G G A T gcagcagtgtccgtcaatcgcacagcgagtgacaccgccacctttagcaagtacctcaac A A V S V N R T A S D T A T F S K Y L N accgcccaggccttgcaccagatgggggtgattgttccggggttggaaaaatgaggtggt T A Q A L H Q M G V I V P G L E K * G G aacaacggtacgggtgtagtggctagccgacaggatgctacttccactaacctgccccat N N G T G V V A S R Q D A T S T N L P H gcggcaggtgcttcccaaacgggtttgggaactggttcgccccgcgaaccagctttaacc A A G A S Q T G L G T G S P R E P A L T gcaacgtcacagcgtgccgtcacggtggttgctggcccccttcgtgcgggcaatagcagt A T S Q R A V T V V A G P L R A G N S S gaaactgatgccctaccgaatgtcatcacccagctctatcatacttcaaccgcccaactc E T D A L P N V I T Q L Y H T S T A Q L gcttacttaaatggccagatcgttgtgatgggttccgaccgggtaccgagtctttggtat A Y L N G Q I V V M G S D R V P S L W Y tgagttgtcggggaggaccaggaatcgggcaaagcgacctgatgagcgaaaaccgagctc * V V G E D Q E S G K A T * * A K T E L aactggggcaccgacaagcagaagcagtttgtcgaaaaccagttggggtttaaagatgac N W G T D K Q K Q F V E N Q L G F K D D tcaaattcggattccaaaaattcgaatttgaaggcccaaggcctcacccaacccgcctac S N S D S K N S N L K A Q G L T Q P A Y ctcatcgccggtcttgacgttgtggccgaccacctcgtctttgcggcctttaaagcgggc L I A G L D V V A D H L V F A A F K A G gcggtggggtatgatatgacgactgattcgagcgcttcgacctacaaccaagcactcgcc A V G Y D M T T D S S A S T Y N Q A L A tggtcgaccacggccgggttggacagtgatggggggtacaaggccttggtggaaaacacg W S T T A G L D S D G G Y K A L V E N T gccgggctcaacggcccgattaatggcttgtttaccctgctcgacacctttgcgtatgtg A G L N G P I N G L F T L L D T F A Y V acccccgtgagtgggatgaaaggggggagtcagaataatgaagaagtgcaaacgacttac T P V S G M K G G S Q N N E E V Q T T Y ccggtcaagtccgaccaaaaggccaccgccaaaattgcctccttaattaatgccagccca P V K S D Q K A T A K I A S L I N A S P ctcaacagttatggggatgatggggtgaccgtgtttgatgccctgggccttaactttaac L N S Y G D D G V T V F D A L G L N F N tttaagttgaacgaggagcgcttgccatcgcgcaccgaccaactgcttgtgtatgggatt F K L N E E R L P S R T D Q L L V Y G I gtaaacgaaagtgaactgaagtccgcacgggaaaatgcccagtcgacctccgatgataat V N E S E L K S A R E N A Q S T S D D N tcaaacaccaaagtcaagtgaaccaacaccgcctcgcactacctccccgtgccgtattac S N T K V K * T N T A S H Y L P V P Y Y tacagtgccaatttccccgaagcgggtaacagaaggcgagcggagcagcggaatggggtg Y S A N F P E A G N R R R A E Q R N G V aagattagcaccttggaatcgcaagccactgatggctttgccaactcgttacttaacttt K I S T L E S Q A T D G F A N S L L N F ggtaccggtcttaaagccggtgttgacccagctccagtagcacggggtcataaaccgaac G T G L K A G V D P A P V A R G H K P N tatagtgcagtactactagtgcgtggtggcgttgtaaggttaaactttaaccccgatact Y S A V L L V R G G V V R L N F N P D T gataaactgttggattctactgacaaaaacagtgaacctatctccttctcctatacccca D K L L D S T D K N S E P I S F S Y T P tttgggtctgctgaaagtgccgtagacctcaccacgttgaaggatgtgacctatattgct F G S A E S A V D L T T L K D V T Y I A gaaagtggtctgtggttctatacctttgacaatggtgaaaaaccaacgtacgatggtaaa E S G L W F Y T F D N G E K P T Y D G K caacaacaggtcaaaaaccgcaagggttatgctgtgattaccgtatcacgtaccggaatt Q Q Q V K N R K G Y A V I T V S R T G I gaatttaacgaggacgctaataccacaaccttaagccaagccccagctgctttggctgtc E F N E D A N T T T L S Q A P A A L A V caaaacgggattgcttccagtcaggacgacctcacaggcatcctaccgttatccgatgag Q N G I A S S Q D D L T G I L P L S D E ttctccgctgtgattaccaaggatcaaacatggaccggtaaggttgatatctataagaac F S A V I T K D Q T W T G K V D I Y K N accaacgggttgtttgaaaaggatgatcagctatcggaaaacgtgaagaggcgtgacaac T N G L F E K D D Q L S E N V K R R D N ggtttggtccctatttacaacgaaggtatcgtcgatatttggggcagagtggattttgct G L V P I Y N E G I V D I W G R V D F A gccaacagtgttttgcaagcgcgtaacctcactgataaaacggttgatgaggtgatcaat A N S V L Q A R N L T D K T V D E V I N aaccccgatatcctccaaagcttctttaagtttaccccagcctttgataaccaaagagca N P D I L Q S F F K F T P A F D N Q R A atgctagtgggggaaaagacatcggatactaccttaacggttaaaccgaagattgagtac M L V G E K T S D T T L T V K P K I E Y ttggatggtaacttctatggtgaggattccaagattgctggaattccgctcaacattgat L D G N F Y G E D S K I A G I P L N I D ttcccttcccggatttttgctggctttgctgctttaccgtcctgggtcattccggtatca F P S R I F A G F A A L P S W V I P V S gtcggttcatcggtgggcattctcttaatcctgctcatcttaggccttggtattggaatt V G S S V G I L L I L L I L G L G I G I ccaatgtataaggtccgcaagcttcaagactccagctttgttgatgtgtttaaaaaggtg P M Y K V R K L Q D S S F V D V F K K V gatacgttgacaaccgctgtgggtagcgtgtacaagaagattatcacccaaacgagtgtg D T L T T A V G S V Y K K I I T Q T S V atcaaaaaagctcctagtgcgttgaaagctgctaataacgctgctcctaaagcaccagtt I K K A P S A L K A A N N A A P K A P V aaaccagctgctccaacagctccaagaccaccagtccaaccacctaaaaaggcttaa K P A A P T A P R P P V Q P P K K A *
MKSKLKLKRYLLFLPLLPLGTLSLANTYLLQDHNTLTPYTPFTTPLNGGLDVVRAAHLHPSYELVDWKRVGDTKLVALVR SALVRVKFQDTTSSDQSNTNQNALSFDTQESQKALNGSQSGSSDTSGSNSQDFASYVLIFKAAPRATWVFERKIKLALPY VKQESQGSGDQGSNGKGSLYKTLQDLLVEQPVTPYTPNAGLARVNGVAQDTVHFGSGQESSWNSQRSQKGLKNNPGPKAV TGFKLDKGRAYRKLNESWPVYEPLDSTKEGKGKDESSWKNSEKTTAENDAPLVGMVGSGAAGSASSLQGNGSNSSGLKSL LRSAPVSVPPSSTSNQTLSLSNPAPVGPQAVVSQPAGGATAAVSVNRTASDTATFSKYLNTAQALHQMGVIVPGLEKWGG NNGTGVVASRQDATSTNLPHAAGASQTGLGTGSPREPALTATSQRAVTVVAGPLRAGNSSETDALPNVITQLYHTSTAQL AYLNGQIVVMGSDRVPSLWYWVVGEDQESGKATWWAKTELNWGTDKQKQFVENQLGFKDDSNSDSKNSNLKAQGLTQPAY LIAGLDVVADHLVFAAFKAGAVGYDMTTDSSASTYNQALAWSTTAGLDSDGGYKALVENTAGLNGPINGLFTLLDTFAYV TPVSGMKGGSQNNEEVQTTYPVKSDQKATAKIASLINASPLNSYGDDGVTVFDALGLNFNFKLNEERLPSRTDQLLVYGI VNESELKSARENAQSTSDDNSNTKVKWTNTASHYLPVPYYYSANFPEAGNRRRAEQRNGVKISTLESQATDGFANSLLNF GTGLKAGVDPAPVARGHKPNYSAVLLVRGGVVRLNFNPDTDKLLDSTDKNSEPISFSYTPFGSAESAVDLTTLKDVTYIA ESGLWFYTFDNGEKPTYDGKQQQVKNRKGYAVITVSRTGIEFNEDANTTTLSQAPAALAVQNGIASSQDDLTGILPLSDE FSAVITKDQTWTGKVDIYKNTNGLFEKDDQLSENVKRRDNGLVPIYNEGIVDIWGRVDFAANSVLQARNLTDKTVDEVIN NPDILQSFFKFTPAFDNQRAMLVGEKTSDTTLTVKPKIEYLDGNFYGEDSKIAGIPLNIDFPSRIFAGFAALPSWVIPVS VGSSVGILLILLILGLGIGIPMYKVRKLQDSSFVDVFKKVDTLTTAVGSVYKKIITQTSVIKKAPSALKAANNAAPKAPV KPAAPTAPRPPVQPPKKA
This information was obtained using the Protein Parameters tool on the ExPASy Molecular Biology Server.
Number of amino acids: 1218
Molecular weight: 130456.9
Theoretical pI: 8.01
Amino acid composition:
Ala (A) 112 9.2%
Arg (R) 38 3.1%
Asn (N) 78 6.4%
Asp (D) 71 5.8%
Cys (C) 0 0.0%
Gln (Q) 57 4.7%
Glu (E) 44 3.6%
Gly (G) 100 8.2%
His (H) 10 0.8%
Ile (I) 38 3.1%
Leu (L) 114 9.4%
Lys (K) 79 6.5%
Met (M) 8 0.7%
Phe (F) 41 3.4%
Pro (P) 67 5.5%
Ser (S) 116 9.5%
Thr (T) 97 8.0%
Trp (W) 17 1.4%
Tyr (Y) 38 3.1%
Val (V) 93 7.6%
Asx (B) 0 0.0%
Glx (Z) 0 0.0%
Xaa (X) 0 0.0%
Total number of negatively charged residues (Asp + Glu): 115
Total number of positively charged residues (Arg + Lys): 117
Atomic composition:
Carbon C 5785
Hydrogen H 9113
Nitrogen N 1583
Oxygen O 1835
Sulfur S 8
Formula: C5785H9113N1583O1835S8
Total number of atoms: 18324
Extinction coefficients:
Conditions: 6.0 M guanidium hydrochloride
0.02 M phosphate buffer
pH 6.5
Extinction coefficients are in units of M-1 cm-1 .
276 278 279 280 282
nm nm nm nm nm
Ext. coefficient 146900 148400 147330 145370 140800
Abs 0.1% (=1 g/l) 1.126 1.138 1.129 1.114 1.079
Estimated half-life:
The N-terminal of the sequence considered is M (Met).
The estimated half-life is: 30 hours (mammalian reticulocytes, in vitro).
>20 hours (yeast, in vivo).
>10 hours (Escherichia coli, in vivo).
Instability index:
The instability index (II) is computed to be 28.46
This classifies the protein as stable.
Aliphatic index: 80.01
Grand average of hydropathicity (GRAVY): -0.355| Model | Percentage of MP Gene |
|---|---|
| Coiled Coil (CCP) | 0 |
| Disordered (SEG) | 16 |
| Transmembrane (PHDhtm) | 2 |
| Transmembrane (TMHMM) | 2 |
| Homologous to known structure (PSIBLAST) | 0 |
Sequence: Amino acid sequence.
CCP (C or -): coiled coil prediction from the ccp program (NCBI toolkit)
SEG (D or -): low complexity regions (possibly disordered) from SEG
PHDhtm (H or -): Transmembrane prediction from PHDhtm
TMHMM (H or -): Transmembrane prediction from TMHMM
PSIBLAST (3 or -): Regions potentially homologous to a protein of known 3D structure, according to PSIBLAST
Pred2ary (H, E, or -): Secondary structure prediction from Pred2ary
10 20 30 40 50 60 70 80
| | | | | | | |
Sequence MKSKLKLKRYLLFLPLLPLGTLSLANTYLLQDHNTLTPYTPFTTPLNGGLDVVRAAHLHPSYELVDWKRVGDTKLVALVR
CCP --------------------------------------------------------------------------------
SEG -DDDDDDDDDDDDDDDDDDDDDDD----------DDDDDDDDDDDD----------------------------DDDDDD
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary ---HHHHHHHHHHH-------------------------------------EEEEE------EEEEEEE-----EEEEEE
90 100 110 120 130 140 150 160
| | | | | | | |
Sequence SALVRVKFQDTTSSDQSNTNQNALSFDTQESQKALNGSQSGSSDTSGSNSQDFASYVLIFKAAPRATWVFERKIKLALPY
CCP --------------------------------------------------------------------------------
SEG DDDDDD-----------------------------DDDDDDDDDDDDDDDDD----------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary ---EEEEEE-------E----------HHHHHHHH-------------------EEEEEEE----HHHHHHHHHH-----
170 180 190 200 210 220 230 240
| | | | | | | |
Sequence VKQESQGSGDQGSNGKGSLYKTLQDLLVEQPVTPYTPNAGLARVNGVAQDTVHFGSGQESSWNSQRSQKGLKNNPGPKAV
CCP --------------------------------------------------------------------------------
SEG --------------------------------------------------------------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary -E----------------HHHHHHHHHH-----------HHHHH------EEE---------------------------
250 260 270 280 290 300 310 320
| | | | | | | |
Sequence TGFKLDKGRAYRKLNESWPVYEPLDSTKEGKGKDESSWKNSEKTTAENDAPLVGMVGSGAAGSASSLQGNGSNSSGLKSL
CCP --------------------------------------------------------------------------------
SEG --------------------------------------------------------DDDDDDDDDDDDDDDDDDDDDDDD
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary ---------HHHHHH--------------------------------------------EEEEE----------HHHHHH
330 340 350 360 370 380 390 400
| | | | | | | |
Sequence LRSAPVSVPPSSTSNQTLSLSNPAPVGPQAVVSQPAGGATAAVSVNRTASDTATFSKYLNTAQALHQMGVIVPGLEKWGG
CCP --------------------------------------------------------------------------------
SEG DDDDDDDDDDDDDDDDDDDDDD----------------------------------------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary ----EEEEE---------------------EEE------EEEEE-------HHHHHHHHHHHHHHHHH------------
410 420 430 440 450 460 470 480
| | | | | | | |
Sequence NNGTGVVASRQDATSTNLPHAAGASQTGLGTGSPREPALTATSQRAVTVVAGPLRAGNSSETDALPNVITQLYHTSTAQL
CCP --------------------------------------------------------------------------------
SEG --------------------------------------------------------------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary -----EEEE---------------------------HHHHH----EEEEE----------------HHHHHHHH-HHHHH
490 500 510 520 530 540 550 560
| | | | | | | |
Sequence AYLNGQIVVMGSDRVPSLWYWVVGEDQESGKATWWAKTELNWGTDKQKQFVENQLGFKDDSNSDSKNSNLKAQGLTQPAY
CCP --------------------------------------------------------------------------------
SEG ---------------------------------------------------------DDDDDDDDDDDDDD---------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary HH----EEEEE-----EEEEEEE---------EEEEE--------HHHHHHHH-------------------------HH
570 580 590 600 610 620 630 640
| | | | | | | |
Sequence LIAGLDVVADHLVFAAFKAGAVGYDMTTDSSASTYNQALAWSTTAGLDSDGGYKALVENTAGLNGPINGLFTLLDTFAYV
CCP --------------------------------------------------------------------------------
SEG --------------------------------------------------------------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary HHH--HHHHHHHHHHHHH---------------HHHHHHHHHHH---------EEEEE------------EEE---EEEE
650 660 670 680 690 700 710 720
| | | | | | | |
Sequence TPVSGMKGGSQNNEEVQTTYPVKSDQKATAKIASLINASPLNSYGDDGVTVFDALGLNFNFKLNEERLPSRTDQLLVYGI
CCP --------------------------------------------------------------------------------
SEG --------------------------------------------------------------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary EE--------------EEE----------EEEEEEE-------------EEEE-----E---------------EEEEEE
730 740 750 760 770 780 790 800
| | | | | | | |
Sequence VNESELKSARENAQSTSDDNSNTKVKWTNTASHYLPVPYYYSANFPEAGNRRRAEQRNGVKISTLESQATDGFANSLLNF
CCP --------------------------------------------------------------------------------
SEG --------------------------------------------------------------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary E----------------------EEEE---------------------------------EEEEE--------HHHHHHH
810 820 830 840 850 860 870 880
| | | | | | | |
Sequence GTGLKAGVDPAPVARGHKPNYSAVLLVRGGVVRLNFNPDTDKLLDSTDKNSEPISFSYTPFGSAESAVDLTTLKDVTYIA
CCP --------------------------------------------------------------------------------
SEG -----------------------DDDDDDDDDDD----------------------------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary H--------------------EEEEEE---EEEEE------------------EEEE----------EE------EEEEE
890 900 910 920 930 940 950 960
| | | | | | | |
Sequence ESGLWFYTFDNGEKPTYDGKQQQVKNRKGYAVITVSRTGIEFNEDANTTTLSQAPAALAVQNGIASSQDDLTGILPLSDE
CCP --------------------------------------------------------------------------------
SEG --------------------------------------------------------------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary ---EEEEEE--------------------EEEEEEE---EEE----------HHHHHHHHHH------------------
970 980 990 1000 1010 1020 1030 1040
| | | | | | | |
Sequence FSAVITKDQTWTGKVDIYKNTNGLFEKDDQLSENVKRRDNGLVPIYNEGIVDIWGRVDFAANSVLQARNLTDKTVDEVIN
CCP --------------------------------------------------------------------------------
SEG --------------------------------------------------------------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary -EEEEE--------EEEEE---------HHHH----------------------EEEEE---------------HHH---
1050 1060 1070 1080 1090 1100 1110 1120
| | | | | | | |
Sequence NPDILQSFFKFTPAFDNQRAMLVGEKTSDTTLTVKPKIEYLDGNFYGEDSKIAGIPLNIDFPSRIFAGFAALPSWVIPVS
CCP --------------------------------------------------------------------------------
SEG ------------------------------------------------------------------------------DD
PHDhtm ----------------------------------------------------------------------------HHHH
TMHMM --------------------------------------------------------------------------HHHHHH
PSIBLAST --------------------------------------------------------------------------------
Pred2ary ---HHHHH----------EEEEEEE-----------EEEEE----------EEEE--------------------EEE--
1130 1140 1150 1160 1170 1180 1190 1200
| | | | | | | |
Sequence VGSSVGILLILLILGLGIGIPMYKVRKLQDSSFVDVFKKVDTLTTAVGSVYKKIITQTSVIKKAPSALKAANNAAPKAPV
CCP --------------------------------------------------------------------------------
SEG DDDDDDDDDDDDDDDDDDDD-----------------------------------------DDDDDDDDDDDDDDDDDDD
PHDhtm HHHHHHHHHHHHHHHHHHHH------------------------------------------------------------
TMHMM HHHHHHHHHHHHHHHHH---------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary ---HHHHHHHHHHHH------H-HHHHHHHH--H-------EEEHHHHHHHHHHHHH---------H-------------
1210
|
Sequence KPAAPTAPRPPVQPPKKA
CCP ------------------
SEG DDDDDDDDDDDDDDDDDD
PHDhtm ------------------
TMHMM ------------------
PSIBLAST ------------------
Pred2ary ------------------