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Available sections:
ATGAAAGGGTTTTCTTGCTCCAGACCGGGCTATCTTACTGGTCTCTTGCTCCTCGCTGTAGCCCCTATTCTCACTGCTTG TACCCGCGACTATACTACCAAGAACGAATTTCAATTAACAACAGCTCAACAGGCCAAATTAAAGCCAGCCACCATCGAAT ATTGGCGTGATGGTGATACGCCTGAGATCAATTACGCAAGCGAAGAGCGCCGAAAGGAAGCTGAACAAAAATCTAAAGAA AACGCTAAGAAAGAAGACAAAAAAGAGGAAAAGAAAACTGAAGATTCCCAAGATTCTTCTTCTGCATCCACGCAAGTTCG TAGTAGTAAACACGGTCTCCGCATCTATGGAATAGATACACCCGAAAAACATGTAAGTAGCAAAGGCGATAGCACCGGTG ATGAAAAAATCGAAGCCGAAAAGGCCTCTAACTATGCTGAAAAGCTAATCCCTAAAGGCAGTACTGTTTGGGTTTGATCA CTCAACACTTACAGCTATGATCGTGAAGTGGGCGCTTTATTCTTTAAGTCTAACCCTAAGCAAACCTTCTTCCAATCCTT TGAAGTAGCTATGGTTGAGGCTGGTCATGCTATTCCAATTGCTGGGACTGGTTTAAATTTAATCGCTGATCCGGAATTAA GTGCTGATGATCCTTTAAGTGTCATTGGTCTACAGTTAGCCAACGCTGCCAATAAGGCTTACAACGCTAAAATTAACATT TGGAGCCATGACACTGATGGTTATCGTTCCTTGACTGCTGTTTACAAGTTAAGGGGCGCTGATATTAGTTGAACCCGTTT CCTAGATGAAGCCAATGGATATTCCTCTGCTAGTGCTGGAACCGGTGCTAGTTTGTACCAACTATGAGATCAACGTCAAG CCAAATTAGCCCAAAAGGGTAGTTAA
(302 codons) fields: [triplet] [frequency: per thousand] ([number]) UUU13.2( 4) UCU26.5( 8) UAU26.5( 8) UGU3.3( 1) UUC13.2( 4) UCC19.9( 6) UAC16.6( 5) UGC3.3( 1) UUA33.1( 10) UCA3.3( 1) UAA3.3( 1) UGA9.9( 3) UUG9.9( 3) UCG0.0( 0) UAG0.0( 0) UGG9.9( 3) CUU3.3( 1) CCU16.6( 5) CAU9.9( 3) CGU19.9( 6) CUC19.9( 6) CCC3.3( 1) CAC3.3( 1) CGC9.9( 3) CUA13.2( 4) CCA6.6( 2) CAA36.4( 11) CGA3.3( 1) CUG0.0( 0) CCG6.6( 2) CAG6.6( 2) CGG0.0( 0) AUU23.2( 7) ACU29.8( 9) AAU13.2( 4) AGU33.1( 10) AUC19.9( 6) ACC23.2( 7) AAC26.5( 8) AGC16.6( 5) AUA3.3( 1) ACA9.9( 3) AAA49.7( 15) AGA3.3( 1) AUG6.6( 2) ACG6.6( 2) AAG39.7( 12) AGG3.3( 1) GUU16.6( 5) GCU69.5( 21) GAU49.7( 15) GGU33.1( 10) GUC3.3( 1) GCC33.1( 10) GAC9.9( 3) GGC16.6( 5) GUA9.9( 3) GCA6.6( 2) GAA59.6( 18) GGA9.9( 3) GUG3.3( 1) GCG0.0( 0) GAG13.2( 4) GGG6.6( 2)
Note: This was generated using the standard codon usage table; UGA codons in MP/MP genes will show up as terminators ("*")
atgaaagggttttcttgctccagaccgggctatcttactggtctcttgctcctcgctgta M K G F S C S R P G Y L T G L L L L A V gcccctattctcactgcttgtacccgcgactatactaccaagaacgaatttcaattaaca A P I L T A C T R D Y T T K N E F Q L T acagctcaacaggccaaattaaagccagccaccatcgaatattggcgtgatggtgatacg T A Q Q A K L K P A T I E Y W R D G D T cctgagatcaattacgcaagcgaagagcgccgaaaggaagctgaacaaaaatctaaagaa P E I N Y A S E E R R K E A E Q K S K E aacgctaagaaagaagacaaaaaagaggaaaagaaaactgaagattcccaagattcttct N A K K E D K K E E K K T E D S Q D S S tctgcatccacgcaagttcgtagtagtaaacacggtctccgcatctatggaatagataca S A S T Q V R S S K H G L R I Y G I D T cccgaaaaacatgtaagtagcaaaggcgatagcaccggtgatgaaaaaatcgaagccgaa P E K H V S S K G D S T G D E K I E A E aaggcctctaactatgctgaaaagctaatccctaaaggcagtactgtttgggtttgatca K A S N Y A E K L I P K G S T V W V * S ctcaacacttacagctatgatcgtgaagtgggcgctttattctttaagtctaaccctaag L N T Y S Y D R E V G A L F F K S N P K caaaccttcttccaatcctttgaagtagctatggttgaggctggtcatgctattccaatt Q T F F Q S F E V A M V E A G H A I P I gctgggactggtttaaatttaatcgctgatccggaattaagtgctgatgatcctttaagt A G T G L N L I A D P E L S A D D P L S gtcattggtctacagttagccaacgctgccaataaggcttacaacgctaaaattaacatt V I G L Q L A N A A N K A Y N A K I N I tggagccatgacactgatggttatcgttccttgactgctgtttacaagttaaggggcgct W S H D T D G Y R S L T A V Y K L R G A gatattagttgaacccgtttcctagatgaagccaatggatattcctctgctagtgctgga D I S * T R F L D E A N G Y S S A S A G accggtgctagtttgtaccaactatgagatcaacgtcaagccaaattagcccaaaagggt T G A S L Y Q L * D Q R Q A K L A Q K G agttaa S *
MKGFSCSRPGYLTGLLLLAVAPILTACTRDYTTKNEFQLTTAQQAKLKPATIEYWRDGDTPEINYASEERRKEAEQKSKE NAKKEDKKEEKKTEDSQDSSSASTQVRSSKHGLRIYGIDTPEKHVSSKGDSTGDEKIEAEKASNYAEKLIPKGSTVWVWS LNTYSYDREVGALFFKSNPKQTFFQSFEVAMVEAGHAIPIAGTGLNLIADPELSADDPLSVIGLQLANAANKAYNAKINI WSHDTDGYRSLTAVYKLRGADISWTRFLDEANGYSSASAGTGASLYQLWDQRQAKLAQKGS
This information was obtained using the Protein Parameters tool on the ExPASy Molecular Biology Server.
Number of amino acids: 301
Molecular weight: 33218.0
Theoretical pI: 6.47
Amino acid composition:
Ala (A) 33 11.0%
Arg (R) 12 4.0%
Asn (N) 12 4.0%
Asp (D) 18 6.0%
Cys (C) 2 0.7%
Gln (Q) 13 4.3%
Glu (E) 22 7.3%
Gly (G) 20 6.6%
His (H) 4 1.3%
Ile (I) 14 4.7%
Leu (L) 24 8.0%
Lys (K) 27 9.0%
Met (M) 2 0.7%
Phe (F) 8 2.7%
Pro (P) 10 3.3%
Ser (S) 30 10.0%
Thr (T) 21 7.0%
Trp (W) 6 2.0%
Tyr (Y) 13 4.3%
Val (V) 10 3.3%
Asx (B) 0 0.0%
Glx (Z) 0 0.0%
Xaa (X) 0 0.0%
Total number of negatively charged residues (Asp + Glu): 40
Total number of positively charged residues (Arg + Lys): 39
Atomic composition:
Carbon C 1465
Hydrogen H 2295
Nitrogen N 403
Oxygen O 471
Sulfur S 4
Formula: C1465H2295N403O471S4
Total number of atoms: 4638
Extinction coefficients:
Conditions: 6.0 M guanidium hydrochloride
0.02 M phosphate buffer
pH 6.5
Extinction coefficients are in units of M-1 cm-1 .
The first table lists values computed assuming ALL Cys
residues appear as half cystines, whereas the second table
assumes that NONE do.
276 278 279 280 282
nm nm nm nm nm
Ext. coefficient 51395 51927 51565 50900 49320
Abs 0.1% (=1 g/l) 1.547 1.563 1.552 1.532 1.485
276 278 279 280 282
nm nm nm nm nm
Ext. coefficient 51250 51800 51445 50780 49200
Abs 0.1% (=1 g/l) 1.543 1.559 1.549 1.529 1.481
Estimated half-life:
The N-terminal of the sequence considered is M (Met).
The estimated half-life is: 30 hours (mammalian reticulocytes, in vitro).
>20 hours (yeast, in vivo).
>10 hours (Escherichia coli, in vivo).
Instability index:
The instability index (II) is computed to be 34.99
This classifies the protein as stable.
Aliphatic index: 69.83
Grand average of hydropathicity (GRAVY): -0.657| Model | Percentage of MP Gene |
|---|---|
| Coiled Coil (CCP) | 10 |
| Disordered (SEG) | 18 |
| Transmembrane (PHDhtm) | 0 |
| Transmembrane (TMHMM) | 0 |
| Homologous to known structure (PSIBLAST) | 54 |
Sequence: Amino acid sequence.
CCP (C or -): coiled coil prediction from the ccp program (NCBI toolkit)
SEG (D or -): low complexity regions (possibly disordered) from SEG
PHDhtm (H or -): Transmembrane prediction from PHDhtm
TMHMM (H or -): Transmembrane prediction from TMHMM
PSIBLAST (3 or -): Regions potentially homologous to a protein of known 3D structure, according to PSIBLAST
Pred2ary (H, E, or -): Secondary structure prediction from Pred2ary
10 20 30 40 50 60 70 80
| | | | | | | |
Sequence MKGFSCSRPGYLTGLLLLAVAPILTACTRDYTTKNEFQLTTAQQAKLKPATIEYWRDGDTPEINYASEERRKEAEQKSKE
CCP ----------------------------------------------------------------CCCCCCCCCCCCCCCC
SEG ----------------------------------------------------------------------------DDDD
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST --------------------------------------------------------------------------------
Pred2ary --------HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH------------------------------
90 100 110 120 130 140 150 160
| | | | | | | |
Sequence NAKKEDKKEEKKTEDSQDSSSASTQVRSSKHGLRIYGIDTPEKHVSSKGDSTGDEKIEAEKASNYAEKLIPKGSTVWVWS
CCP CCCCCCCCCCCCC-------------------------------------------------------------------
SEG DDDDDDDDDDDDDDDDDDDDD-----------------------------------------------------------
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Pred2ary ---EEEEEE---EEEEE------------EEEEEEEE---------------------HHHHHHHHHHHHH---EEEEEE
170 180 190 200 210 220 230 240
| | | | | | | |
Sequence LNTYSYDREVGALFFKSNPKQTFFQSFEVAMVEAGHAIPIAGTGLNLIADPELSADDPLSVIGLQLANAANKAYNAKINI
CCP --------------------------------------------------------------------------------
SEG ------------------------------------------------------------------DDDDDDDDDDDDDD
PHDhtm --------------------------------------------------------------------------------
TMHMM --------------------------------------------------------------------------------
PSIBLAST 33333333333333333333333333333333333333333333333333333333333333333333333333333333
Pred2ary -------EEEEEEEE---------HHHHHHHHHHH-HHHHH-----------------HHHHHHHHHHHHHHHHHHH---
250 260 270 280 290 300
| | | | | |
Sequence WSHDTDGYRSLTAVYKLRGADISWTRFLDEANGYSSASAGTGASLYQLWDQRQAKLAQKGS
CCP -------------------------------------------------------------
SEG ------------------------------DDDDDDDDDDDDDD-----------------
PHDhtm -------------------------------------------------------------
TMHMM -------------------------------------------------------------
PSIBLAST 3333333333333333333333333333333333333333333333333333333333333
Pred2ary --------------EEEE-----HHH------------------HHHHHHHHHHHHHH---