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This gene has the annotation "MutT/nudix family protein".
The target was selected as part of Collaborators' targets.
Available sections:
| Experiment | Result | User | Experiment Date |
|---|---|---|---|
| Selected | Done | srholbrook | 2002-11-01 |
| Cloned | Done | srholbrook | 2002-11-04 |
| Expression tested | Done | srholbrook | 2002-11-04 |
| Solubility tested | S | srholbrook | 2002-11-04 |
| Purified | Done | srholbrook | 2002-11-04 |
| Crystallized | Done | srholbrook | 2002-11-04 |
| Diffraction quality crystals | Done | srholbrook | 2002-11-04 |
| Phasing diffraction data | Done | srholbrook | 2002-11-04 |
| Traceable map | Done | srholbrook | 2002-11-04 |
| Crystal structure | Done | dhshin | 2004-04-23 |
| In PDB | 1SJY 1SOI 1SU2 1SZ3 | dhshin | 2004-04-23 |
GTGGAGCACGACGAGCGAACCCACGTTCCGGTGGAGCTGAGGGCCGCCGGGGTCGTCCTGCTGAATGAGCGGGGCGACAT CCTGCTGGTGCAGGAAAAAGGAATTCCTGGTCACCCGGAAAAGGCCGGGTTGTGGCACATCCCCTCCGGCGCCGTCGAGG ACGGTGAAAATCCGCAGGACGCCGCGGTGCGCGAGGCCTGCGAGGAAACCGGCCTGCGCGTGCGCCCCGTCAAGTTCCTG GGCGCTTACCTGGGCCGCTTCCCCGACGGCGTGCTGATTTTGCGCCACGTCTGGTTGGCCGAGCCGGAGCCGGGACAGAC GCTCGCCCCTGCTTTCACTGATGAAATAGCCGAGGCCAGCTTCGTCAGCCGCGAGGACTTTGCCCAGTTATATGCGGCGG GCCAGATTCGCATGTATCAGACCAAACTGTTTTACGCCGACGCCTTACGGGAAAAGGGCTTTCCCGCCCTCCCTGTTTAA
(160 codons) fields: [triplet] [frequency: per thousand] ([number]) UUU18.8( 3) UCU0.0( 0) UAU12.5( 2) UGU0.0( 0) UUC25.0( 4) UCC6.2( 1) UAC12.5( 2) UGC6.2( 1) UUA12.5( 2) UCA0.0( 0) UAA6.2( 1) UGA0.0( 0) UUG18.8( 3) UCG0.0( 0) UAG0.0( 0) UGG12.5( 2) CUU0.0( 0) CCU18.8( 3) CAU0.0( 0) CGU0.0( 0) CUC12.5( 2) CCC25.0( 4) CAC31.2( 5) CGC43.8( 7) CUA0.0( 0) CCA0.0( 0) CAA0.0( 0) CGA6.2( 1) CUG62.5( 10) CCG31.2( 5) CAG37.5( 6) CGG12.5( 2) AUU18.8( 3) ACU6.2( 1) AAU12.5( 2) AGU0.0( 0) AUC12.5( 2) ACC18.8( 3) AAC0.0( 0) AGC12.5( 2) AUA6.2( 1) ACA0.0( 0) AAA12.5( 2) AGA0.0( 0) AUG6.2( 1) ACG6.2( 1) AAG18.8( 3) AGG6.2( 1) GUU12.5( 2) GCU12.5( 2) GAU6.2( 1) GGU12.5( 2) GUC37.5( 6) GCC87.5( 14) GAC43.8( 7) GGC50.0( 8) GUA0.0( 0) GCA0.0( 0) GAA37.5( 6) GGA12.5( 2) GUG37.5( 6) GCG18.8( 3) GAG68.8( 11) GGG12.5( 2)
Note: These were generated using Hisao's algorithm, and do not take into account possible mispriming, self-complementarity, or requirements for mutations anywhere in the sequences. The -R1 primers are for the N-terminal end, and begin with an NdeI restriction site (CATATG). The -R2 primers are for the C-terminal end, and begin with a BamHI site (GGATCC) if the target has no other BamHI sites. If the target does have a BamHI site, the -R2 primer wil begin with a BglII site (AGATCT), unless the target has no BglII sites. If the target has both sites, the design program gives up and doesn't prepend a restriction site to the -R2 primer!
Predicted Tm was obtained using the Tm determination tool at the Virtual Genome Center.
| Primer ID | Predicted Tm | sequence |
|---|---|---|
| 1292B-R1 | 61.80 | CATATGGAGCACGACGAGCG |
| 1292B-R2 | 63.10 | GGATCCTTAAACAGGGAGGGCGGG |
| 1292B-R10 | 64.10 | GGCGGTGGTGGCGGCATGGAGCACGACGAGCGA |
| 1292B-R11 | 63.70 | GTTCTTCTCCTTTGCGCCCCTAAACAGGGAGGGCGGGA |
Note: This was generated using the standard codon usage table; UGA codons in MP/MP genes will show up as terminators ("*")
gtggagcacgacgagcgaacccacgttccggtggagctgagggccgccggggtcgtcctg V E H D E R T H V P V E L R A A G V V L ctgaatgagcggggcgacatcctgctggtgcaggaaaaaggaattcctggtcacccggaa L N E R G D I L L V Q E K G I P G H P E aaggccgggttgtggcacatcccctccggcgccgtcgaggacggtgaaaatccgcaggac K A G L W H I P S G A V E D G E N P Q D gccgcggtgcgcgaggcctgcgaggaaaccggcctgcgcgtgcgccccgtcaagttcctg A A V R E A C E E T G L R V R P V K F L ggcgcttacctgggccgcttccccgacggcgtgctgattttgcgccacgtctggttggcc G A Y L G R F P D G V L I L R H V W L A gagccggagccgggacagacgctcgcccctgctttcactgatgaaatagccgaggccagc E P E P G Q T L A P A F T D E I A E A S ttcgtcagccgcgaggactttgcccagttatatgcggcgggccagattcgcatgtatcag F V S R E D F A Q L Y A A G Q I R M Y Q accaaactgttttacgccgacgccttacgggaaaagggctttcccgccctccctgtttaa T K L F Y A D A L R E K G F P A L P V *
MEHDERTHVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFL GAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADALREKGFPALPV
This information was obtained using the Protein Parameters tool on the ExPASy Molecular Biology Server.
Number of amino acids: 159
Molecular weight: 17568.9
Theoretical pI: 5.01
Amino acid composition:
Ala (A) 19 11.9%
Arg (R) 11 6.9%
Asn (N) 2 1.3%
Asp (D) 8 5.0%
Cys (C) 1 0.6%
Gln (Q) 6 3.8%
Glu (E) 17 10.7%
Gly (G) 14 8.8%
His (H) 5 3.1%
Ile (I) 6 3.8%
Leu (L) 17 10.7%
Lys (K) 5 3.1%
Met (M) 2 1.3%
Phe (F) 7 4.4%
Pro (P) 12 7.5%
Ser (S) 3 1.9%
Thr (T) 5 3.1%
Trp (W) 2 1.3%
Tyr (Y) 4 2.5%
Val (V) 13 8.2%
Asx (B) 0 0.0%
Glx (Z) 0 0.0%
Xaa (X) 0 0.0%
Total number of negatively charged residues (Asp + Glu): 25
Total number of positively charged residues (Arg + Lys): 16
Atomic composition:
Carbon C 792
Hydrogen H 1231
Nitrogen N 217
Oxygen O 230
Sulfur S 3
Formula: C792H1231N217O230S3
Total number of atoms: 2473
Extinction coefficients:
Conditions: 6.0 M guanidium hydrochloride
0.02 M phosphate buffer
pH 6.5
Extinction coefficients are in units of M-1 cm-1 .
The first table lists values computed assuming ALL Cys
residues appear as half cystines, whereas the second table
assumes that NONE do.
276 278 279 280 282
nm nm nm nm nm
Ext. coefficient 16600 16800 16700 16500 16000
Abs 0.1% (=1 g/l) 0.945 0.956 0.951 0.939 0.911
276 278 279 280 282
nm nm nm nm nm
Ext. coefficient 16600 16800 16700 16500 16000
Abs 0.1% (=1 g/l) 0.945 0.956 0.951 0.939 0.911
Estimated half-life:
The N-terminal of the sequence considered is M (Met).
The estimated half-life is: 30 hours (mammalian reticulocytes, in vitro).
>20 hours (yeast, in vivo).
>10 hours (Escherichia coli, in vivo).
Instability index:
The instability index (II) is computed to be 56.28
This classifies the protein as unstable.
Aliphatic index: 92.08
Grand average of hydropathicity (GRAVY): -0.201